6OEQ Recombination Dna date Mar 27, 2019
title Cryo-Em Structure Of Mouse Rag12 12rss-Prc23rss-Nfc Comple
authors X.Chen, Y.Cui, Z.H.Zhou, W.Yang, M.Gellert
compound source
Molecule: V(D)J Recombination-Activating Protein 1
Chain: A, C
Synonym: Rag-1
Ec: 3.1.-.-,2.3.2.27
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Rag1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: V(D)J Recombination-Activating Protein 2
Chain: B, D
Synonym: Rag-2
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Rag2, Rag-2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Dna (57-Mer)
Chain: G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: Dna (57-Mer)
Chain: J
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: Dna (46-Mer)
Chain: F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: Dna (46-Mer)
Chain: I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.30 Å
ligand CA, ZN enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • nuclease activity
  • endonuclease activity


  • D, B
  • methylated histone binding
  • ubiquitin protein ligase act...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (357 Kb) [Save to disk]
  • Biological Unit Coordinates (6oeq.pdb1.gz) 345 Kb
  • LPC: Ligand-Protein Contacts for 6OEQ
  • CSU: Contacts of Structural Units for 6OEQ
  • Retrieve 6OEQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OEQ from S2C, [Save to disk]
  • View 6OEQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6OEQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6oeq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6oeq_A] [6oeq_B] [6oeq_C] [6oeq_G] [6oeq_D] [6oeq_J] [6oeq_I] [6oeq_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6OEQ
  • Community annotation for 6OEQ at PDBWiki (http://pdbwiki.org)

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