6OEV Membrane Protein date Mar 27, 2019
title Structure Of Human Patched1 In Complex With Native Sonic Hed
authors X.Qi, X.Li
compound source
Molecule: Protein Patched Homolog 1
Chain: A
Synonym: Ptc1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptch1, Ptch
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Sonic Hedgehog Protein
Chain: C
Fragment: Residues 24-197
Synonym: Shh,Hhg-1,Shh Unprocessed N-Terminal Signaling And Terminal Autoprocessing Domains,Shhnc;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Shh
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
ligand NAG, PLM, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


C


Primary referenceStructures of human Patched and its complex with native palmitoylated sonic hedgehog., Qi X, Schmiege P, Coutavas E, Wang J, Li X, Nature. 2018 Jul 11. pii: 10.1038/s41586-018-0308-7. doi:, 10.1038/s41586-018-0308-7. PMID:29995851
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (6oev.pdb1.gz) 173 Kb
  • LPC: Ligand-Protein Contacts for 6OEV
  • CSU: Contacts of Structural Units for 6OEV
  • Retrieve 6OEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OEV from S2C, [Save to disk]
    • View 6OEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6OEV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6oev_A] [6oev_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6OEV
  • Community annotation for 6OEV at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science