6OFE Protein Transport date Mar 29, 2019
title Helical Reconstruction Of Type III Secretion System Needle F Mutant-Prgi S49a
authors E.Z.Guo, J.E.Galan
compound source
Molecule: Protein Prgi
Chain: P, Q, R, S, T, K, L, M, N, O, F, G, H, I, J, D, A, B
Synonym: Type III Secretion System Apparatus
Engineered: Yes
Mutation: Yes
 Organism_scientific: Salmonella Typhimurium (Strain Sl1344)
Organism_taxid: 216597
Strain: Sl1344
Gene: Prgi, Sl1344_2853
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.61 Å
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (218 Kb) [Save to disk]
  • Biological Unit Coordinates (6ofe.pdb1.gz) 215 Kb
  • CSU: Contacts of Structural Units for 6OFE
  • Retrieve 6OFE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OFE from S2C, [Save to disk]
    • View 6OFE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6OFE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ofe_T] [6ofe_R] [6ofe_B] [6ofe_A] [6ofe_P] [6ofe_M] [6ofe_O] [6ofe_E] [6ofe_J] [6ofe_G] [6ofe_D] [6ofe_C] [6ofe_L] [6ofe_Q] [6ofe_H] [6ofe_K] [6ofe_F] [6ofe_S] [6ofe_I] [6ofe_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6OFE
  • Community annotation for 6OFE at PDBWiki (http://pdbwiki.org)

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