6OGJ Dna Binding Protein Dna date Apr 02, 2019
title Mecp2 Mbd In Complex With Dna
authors M.Lei, W.Tempel, C.H.Arrowsmith, C.Bountra, A.M.Edwards, J.Min, St Genomics Consortium (Sgc)
compound source
Molecule: Methyl-Cpg-Binding Protein 2
Chain: A, B
Synonym: Mecp2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mecp2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-V2r-Ril
Expression_system_plasmid: Pnic-Ch

Molecule: Dna (5'-D(Cpgpgpapgptpgptpapgpgpc)-3'
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Gpcpcptpapcpapcptpcpcpg)-3'
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.226 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.723 90.181 40.524 90.00 92.57 90.00
method X-Ray Diffractionresolution 1.80 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (6ogj.pdb1.gz) 69 Kb
  • CSU: Contacts of Structural Units for 6OGJ
  • Structure Factors (1544 Kb)
  • Retrieve 6OGJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OGJ from S2C, [Save to disk]
  • View 6OGJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6OGJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ogj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ogj_C] [6ogj_A] [6ogj_B] [6ogj_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6OGJ
  • Community annotation for 6OGJ at PDBWiki (http://pdbwiki.org)

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