6OGK Dna Binding Protein Dna date Apr 02, 2019
title Mecp2 Mbd In Complex With Dna
authors M.Lei, W.Tempel, C.H.Arrowsmith, C.Bountra, A.M.Edwards, J.Min, St Genomics Consortium, Structural Genomics Consortium (Sgc)
compound source
Molecule: Methyl-Cpg-Binding Protein 2
Chain: A
Synonym: Mecp2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mecp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-V2r-Ril
Expression_system_plasmid: Pnic-Ch

Molecule: Dna (5'-D(Gpcpcptpap(5cm)Papcptpcpcpg
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Cpgpgpapgptpgptpapgpgpc)-3'
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.470 51.976 66.304 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (6ogk.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 6OGK
  • Structure Factors (1975 Kb)
  • Retrieve 6OGK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OGK from S2C, [Save to disk]
  • View 6OGK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6OGK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ogk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ogk_D] [6ogk_C] [6ogk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6OGK
  • Community annotation for 6OGK at PDBWiki (http://pdbwiki.org)

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