6OGX Immune System date Apr 03, 2019
title Ternary Complex Of Ox40r (Tnfrsf4) Bound To Fab1 And Fab2
authors M.H.Ultsch, G.Boenig, S.F.Harris
compound source
Molecule: Fab 1 Heavy Chain
Chain: C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fab1 Light Chain
Chain: D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: G
Synonym: Act35 Antigen,Ox40l Receptor,Tax Transcriptionally Glycoprotein 1 Receptor;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf4, Txgp1l
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Fab2 Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fab2 Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.203 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.765 125.249 197.488 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.77 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (6ogx.pdb1.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 6OGX
  • CSU: Contacts of Structural Units for 6OGX
  • Structure Factors (1158 Kb)
  • Retrieve 6OGX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OGX from S2C, [Save to disk]
  • View 6OGX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6OGX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ogx_G] [6ogx_C] [6ogx_L] [6ogx_D] [6ogx_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6OGX
  • Community annotation for 6OGX at PDBWiki (http://pdbwiki.org)

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