6OM1	Immune System	date	Apr 17, 2019
title	Crystal Structure Of An Atypical Integrin
authors	J.C.Wang, T.A.Springer
compound		source
Molecule: Integrin Alpha-V Chain: A, C, E, G Synonym: Vitronectin Receptor,Vitronectin Receptor Subunit Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Itgav, Msk8, Vnra, Vtnr Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_strain: Hek293 Expression_system_cell_line: Hek293s Gnt1 -- Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcdna3.1
Molecule: Integrin Beta-8 Chain: B, D, F, H Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Itgb8 Expression_system: Homo Sapiens Expression_system_taxid: 9606
symmetry	Space Group: P 1	R_factor 0.248 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 144.240 55.070 175.070 90.37 107.00 90.01
method	X-Ray Diffraction	resolution	2.66 Å
ligand	BMA, CA, EDO, MAN, MES, MG, NAG	enzyme
Gene Ontology	Chain Function Process Component A, E, C, G F, B, H, D

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1809 Kb) [Save to disk] Biological Unit Coordinates (6om1.pdb1.gz) 454 Kb Biological Unit Coordinates (6om1.pdb2.gz) 448 Kb Biological Unit Coordinates (6om1.pdb3.gz) 455 Kb Biological Unit Coordinates (6om1.pdb4.gz) 462 Kb LPC: Ligand-Protein Contacts for 6OM1 CSU: Contacts of Structural Units for 6OM1 Structure Factors (2987 Kb) Retrieve 6OM1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6OM1 from S2C, [Save to disk]

View 6OM1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6OM1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6om1_F] [6om1_B] [6om1_D] [6om1_C] [6om1_H] [6om1_G] [6om1_E] [6om1_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6OM1

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