6OM3 Structural Protein Dna date Apr 18, 2019
title Crystal Structure Of The Orc1 Bah Domain In Complex With A N Core Particle
authors P.E.De Ioannes, M.Wang, K.J.Armache
compound source
Molecule: Histone H3.2
Chain: A, E, M, Q
Engineered: Yes
Mutation: Yes
 Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B, F, N, R
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a
Chain: C, G, O, S
Engineered: Yes
Mutation: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Variant: Atcc 204508 S288c
Gene: Hist1h2aj, Loc494591, Xelaev_18003602mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b 1.1
Chain: D, H, P, T
Synonym: H2b1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (146-Mer)
Chain: I, U
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (147-Mer)
Chain: J, V
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Origin Recognition Complex Subunit 1
Chain: K, L, W, X
Synonym: Origin Recognition Complex 120 Kda Subunit
Engineered: Yes
Mutation: Yes
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Variant: Atcc 204508 S288c
Gene: Orc1, Yml065w
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.213 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.254 166.428 168.277 90.00 90.28 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand ACE enzyme
Gene
Ontology
ChainFunctionProcessComponent
E, Q, M, A


F, N, B, R


K, L, W, X


S, C, O, G


T, P, H, D


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1258 Kb) [Save to disk]
  • Biological Unit Coordinates (6om3.pdb1.gz) 634 Kb
  • Biological Unit Coordinates (6om3.pdb2.gz) 599 Kb
  • LPC: Ligand-Protein Contacts for 6OM3
  • CSU: Contacts of Structural Units for 6OM3
  • Structure Factors (2186 Kb)
  • Retrieve 6OM3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OM3 from S2C, [Save to disk]
    • View 6OM3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6OM3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6om3_A] [6om3_I] [6om3_B] [6om3_E] [6om3_K] [6om3_R] [6om3_C] [6om3_G] [6om3_J] [6om3_X] [6om3_Q] [6om3_O] [6om3_H] [6om3_L] [6om3_S] [6om3_P] [6om3_W] [6om3_V] [6om3_M] [6om3_U] [6om3_D] [6om3_F] [6om3_N] [6om3_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6OM3
  • Community annotation for 6OM3 at PDBWiki (http://pdbwiki.org)

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