6OMM Signaling Protein date Apr 19, 2019
title Cryo-Em Structure Of Formyl Peptide Receptor 2lipoxin A4 Re Complex With Gi
authors Y.Zhuang, H.Liu, P.W.De Waal, X.E.Zhou, L.Wang, X.Meng, G.Zhao, Y.K K.Melcher, H.E.Xu, C.Zhang
compound source
Molecule: N-Formyl Peptide Receptor 2
Chain: R
Synonym: Fmlp-Related Receptor I,Fmlp-R-I,Formyl Peptide Re Like 1,Hm63,Lipoxin A4 Receptor,Lxa4 Receptor,Rfp;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fpr2, Fprh1, Fprl1, Lxa4r
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Peptide Agonist
Chain: L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Guanine Nucleotide-Binding Protein G(I) Subunit A
Chain: A
Synonym: Adenylate Cyclase-Inhibiting G Alpha Protein
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gnai1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(T) Beta-1;
Chain: B
Synonym: Transducin Beta Chain 1
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gnb1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(O) Gamma-2;
Chain: C
Synonym: G Gamma-I
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gng2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Scfv16
Chain: E
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.17 Å
ligand CLR, PLM, QXV enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • G-protein coupled acetylchol...

  • C


    R


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (6omm.pdb1.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 6OMM
  • CSU: Contacts of Structural Units for 6OMM
  • Retrieve 6OMM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OMM from S2C, [Save to disk]
  • View 6OMM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6OMM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6omm_R] [6omm_E] [6omm_L] [6omm_C] [6omm_A] [6omm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6OMM
  • Community annotation for 6OMM at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science