6OMN Cytokine date Apr 19, 2019
title Glycosylated Bmp2 Homodimer
authors Z.S.Juo, H.Seeherman
compound source
Molecule: Bone Morphogenetic Protein 2
Chain: E, F, G, H
Synonym: Bmp-2,Bone Morphogenetic Protein 2a,Bmp-2a
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bmp2, Bmp2a
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
symmetry Space Group: P 31
R_factor 0.175 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.743 62.743 126.350 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.68 Å
ligand BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
H, F, G, E


Primary referenceA BMP/activin A chimera is superior to native BMPs and induces bone repair in nonhuman primates when delivered in a composite matrix., Seeherman HJ, Berasi SP, Brown CT, Martinez RX, Juo ZS, Jelinsky S, Cain MJ, Grode J, Tumelty KE, Bohner M, Grinberg O, Orr N, Shoseyov O, Eyckmans J, Chen C, Morales PR, Wilson CG, Vanderploeg EJ, Wozney JM, Sci Transl Med. 2019 Apr 24;11(489). pii: 11/489/eaar4953. doi:, 10.1126/scitranslmed.aar4953. PMID:31019025
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (6omn.pdb1.gz) 74 Kb
  • Biological Unit Coordinates (6omn.pdb2.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 6OMN
  • CSU: Contacts of Structural Units for 6OMN
  • Structure Factors (787 Kb)
  • Retrieve 6OMN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OMN from S2C, [Save to disk]
    • View 6OMN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6OMN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6omn_E] [6omn_F] [6omn_H] [6omn_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6OMN
  • Community annotation for 6OMN at PDBWiki (http://pdbwiki.org)

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