6OOV Dna Binding Protein Dna date Apr 23, 2019
title Crystal Structure Of Hmces Srap Domain In Complex With Palin Overhang Dna
authors L.Halabelian, H.Zeng, Y.Li, C.Bountra, A.M.Edwards, C.H.Arrowsmit Structural Genomics Consortium (Sgc)
compound source
Molecule: Embryonic Stem Cell-Specific 5-Hydroxymethylcytos Binding Protein;
Chain: A, B
Synonym: Es Cell-Specific 5hmc-Binding Protein,Putative Pep Srapd1,Srap Domain-Containing Protein 1;
Ec: 3.4.-.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hmces, C3orf37, Dc12, Srapd1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Cpapapcpgptptpgptptptptpt)
Chain: C, D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.729 139.828 66.613 90.00 99.99 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand UNX enzyme Hydrolase E.C.3.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (6oov.pdb1.gz) 184 Kb
  • LPC: Ligand-Protein Contacts for 6OOV
  • CSU: Contacts of Structural Units for 6OOV
  • Structure Factors (1700 Kb)
  • Retrieve 6OOV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OOV from S2C, [Save to disk]
    • View 6OOV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6OOV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6oov_A] [6oov_B] [6oov_C] [6oov_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6OOV
  • Community annotation for 6OOV at PDBWiki (http://pdbwiki.org)

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