6OSP Transferase date May 01, 2019
title Crystal Structure Analysis Of Pip4k2a
authors H.S.Seo, S.Dhe-Paganon
compound source
Molecule: Phosphatidylinositol 5-Phosphate 4-Kinase Type-2
Chain: A, B
Synonym: 1-Phosphatidylinositol 5-Phosphate 4-Kinase 2-Alph Diphosphoinositide Kinase 2-Alpha,Pip5kiii,Phosphatidylinos Phosphate 4-Kinase Type II Alpha,Pip4kii-Alpha,Ptdins(4)P-5 Isoform,Ptdins(4)P-5-Kinase C Isoform,Ptdins(5)P-4-Kinase I Alpha;
Ec: 2.7.1.149
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pip4k2a, Pip5k2, Pip5k2a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.177 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.190 98.680 105.120 90.00 93.66 90.00
method X-Ray Diffractionresolution 2.21 Å
ligand GOL, N51 enzyme Transferase E.C.2.7.1.149 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • phosphatidylinositol phospha...
  • 1-phosphatidylinositol-4-pho...
  • 1-phosphatidylinositol-5-pho...


  • Primary referenceTargeting the PI5P4K Lipid Kinase Family in Cancer Using Covalent Inhibitors., Sivakumaren SC, Shim H, Zhang T, Ferguson FM, Lundquist MR, Browne CM, Seo HS, Paddock MN, Manz TD, Jiang B, Hao MF, Krishnan P, Wang DG, Yang TJ, Kwiatkowski NP, Ficarro SB, Cunningham JM, Marto JA, Dhe-Paganon S, Cantley LC, Gray NS, Cell Chem Biol. 2020 Mar 3. pii: S2451-9456(20)30067-2. doi:, 10.1016/j.chembiol.2020.02.003. PMID:32130941
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (225 Kb) [Save to disk]
  • Biological Unit Coordinates (6osp.pdb1.gz) 111 Kb
  • Biological Unit Coordinates (6osp.pdb2.gz) 107 Kb
  • Biological Unit Coordinates (6osp.pdb3.gz) 216 Kb
  • LPC: Ligand-Protein Contacts for 6OSP
  • CSU: Contacts of Structural Units for 6OSP
  • Structure Factors (687 Kb)
  • Retrieve 6OSP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OSP from S2C, [Save to disk]
  • View 6OSP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6OSP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6osp_A] [6osp_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6OSP
  • Community annotation for 6OSP at PDBWiki (http://pdbwiki.org)

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