6OY6 Transcription Dna Rna date May 14, 2019
title X-Ray Crystal Structure Of A Bacterial Reiterative Transcrip Complex Of Pyrg Promoter At 5 Min
authors Y.Shin, K.S.Murakami
compound source
Molecule: Dna-Directed Rna Polymerase Subunit Alpha
Chain: A, B
Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha;
Ec: 2.7.7.6
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: C
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: D
Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta';
Ec: 2.7.7.6

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: E
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Rna Polymerase Sigma Factor Siga
Chain: F

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Dna (5'- D(Pcpcptpgpcpaptpcpapgpapgpcpcpcpapapapa
Chain: G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423

Molecule: Dna (5'- D(Tpaptpapaptpgpgpgpgpaptpcptpgpaptpgpcp 3');
Chain: H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423

Molecule: Rna (5'-D((Gtp))-R(Pgpgpg)-3')
Chain: I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
symmetry Space Group: C 1 2 1
R_factor 0.212 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
186.882 102.138 297.364 90.00 98.81 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand GTP, MG, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


D


E


F
  • bacterial sigma factor activ...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (592 Kb) [Save to disk]
  • Biological Unit Coordinates (6oy6.pdb1.gz) 583 Kb
  • LPC: Ligand-Protein Contacts for 6OY6
  • CSU: Contacts of Structural Units for 6OY6
  • Structure Factors (2533 Kb)
  • Retrieve 6OY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OY6 from S2C, [Save to disk]
  • View 6OY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6OY6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6oy6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6oy6_I] [6oy6_B] [6oy6_A] [6oy6_H] [6oy6_C] [6oy6_G] [6oy6_F] [6oy6_D] [6oy6_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6OY6
  • Community annotation for 6OY6 at PDBWiki (http://pdbwiki.org)

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