6P1U Transferase date May 20, 2019
title Post-Catalytic Nicked Complex Of Human Dna Polymerase Mu Wit Gapped Substrate Containing Template 8og And Newly Incorpor
authors A.M.Kaminski, L.C.Pedersen, K.Bebenek, K.K.Chiruvella, D.A.Ramsd T.A.Kunkel
compound source
Molecule: Dna-Directed Dnarna Polymerase Mu
Chain: A
Fragment: Residues 134-494
Synonym: Pol Mu,Terminal Transferase
Ec: 2.7.7.7
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polm, Polmu
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: Rosetta2 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgexm

Molecule: Dna (5'-D(Cpgpgpcp(8og)Ptpapcpg)-3')
Chain: T
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dnarna (5'-D(Cpgptpa)-R(Pc)-3')
Chain: P
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna (5'-D(Pgpcpcpg)-3')
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.169 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.864 68.825 110.594 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand 8OG, CL, CTP, EDO, EPE, MN, NA, PPV enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (6p1u.pdb1.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 6P1U
  • CSU: Contacts of Structural Units for 6P1U
  • Structure Factors (357 Kb)
  • Retrieve 6P1U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6P1U from S2C, [Save to disk]
    • View 6P1U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6P1U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6p1u_T] [6p1u_D] [6p1u_P] [6p1u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6P1U
  • Community annotation for 6P1U at PDBWiki (http://pdbwiki.org)

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