6P2U Chaperone date May 22, 2019
title Structure Of Mortalin-Nbd With N6-Propargyladenosine-5'-Diph
authors M.A.Moseng, R.C.Page
compound source
Molecule: Stress-70 Protein, Mitochondrial
Chain: A
Fragment: Nbd (Unp Residues 52-431)
Synonym: 75 Kda Glucose-Regulated Protein, Grp-75, Heat Sho Protein 9, Mortalin, Mot, Peptide-Binding Protein 74, Pbp74
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hspa9, Grp75, Hspa9b, Mt-Hsp70
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Rosetta2
symmetry Space Group: P 21 21 21
R_factor 0.216 R_Free 0.238
length a length b length c angle alpha angle beta angle gamma
51.040 68.250 121.220 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Primary reference2- and N6-Functionalized Adenosine-5'-diphosphate Analogues for the Inhibition of Mortalin., Moseng MA, Nix JC, Page RC, FEBS Lett. 2019 Jun 8. doi: 10.1002/1873-3468.13475. PMID:31177526
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (6p2u.pdb1.gz) 64 Kb
  • CSU: Contacts of Structural Units for 6P2U
  • Structure Factors (649 Kb)
  • Retrieve 6P2U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6P2U from S2C, [Save to disk]
  • View 6P2U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6P2U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6p2u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6p2u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6P2U
  • Community annotation for 6P2U at PDBWiki (http://pdbwiki.org)

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