6P5V Ligase date May 31, 2019
title Structure Of Dcn1 Bound To N-((4s,5s)-7-Ethyl-4-(4-Fluorophe Methyl-6-Oxo-1-Phenyl-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-B] Yl)-3-Methylbenzamide
authors R.K.Guy, H.S.Kim, J.T.Hammill, D.C.Scott, B.A.Schulman
compound source
Molecule: Lysozyme,Dcn1-Like Protein 1 Fusion
Chain: A
Synonym: Dcun1 Domain-Containing Protein 1,Defective In Cul Neddylation Protein 1-Like Protein 1,Squamous Cell Carcinom Oncogene;
Ec: 3.2.1.17
Engineered: Yes
 Organism_scientific: Enterobacteria Phage T4, Homo Sapiens
Organism_common: Human
Organism_taxid: 10665, 9606
Gene: E, T4tp126, Dcun1d1, Dcun1l1, Rp42, Sccro
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.171 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.310 96.985 60.072 90.00 106.09 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand MPD, O37 enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk]
  • Biological Unit Coordinates (6p5v.pdb1.gz) 194 Kb
  • LPC: Ligand-Protein Contacts for 6P5V
  • CSU: Contacts of Structural Units for 6P5V
  • Structure Factors (1479 Kb)
  • Retrieve 6P5V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6P5V from S2C, [Save to disk]
    • View 6P5V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6P5V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6p5v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6P5V
  • Community annotation for 6P5V at PDBWiki (http://pdbwiki.org)

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