6PBD Transferase Dna date Jun 13, 2019
title Dna N6-Adenine Methyltransferase Ccrm In Complex With Double Dna Oligonucleotide Containing Its Recognition Sequence Gaa
authors J.R.Horton, X.Cheng, C.B.Woodcock
compound source
Molecule: Modification Methylase Ccrmi
Chain: A, B
Synonym: M.Ccrmi, Adenine-Specific Methyltransferase Ccrmi
Ec: 2.1.1.72
Engineered: Yes
Organism_scientific: Caulobacter Vibrioides
Organism_taxid: 155892
Gene: Ccrmim, Ccrm, Cc_0378
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Plus

Molecule: Dna (5'- D(Cpgpaptptpcpapaptpgpapaptpcpcpcpapapg)
Chain: X
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Gpcptptpgpgpgpaptptpcpaptptpgpapaptpc)
Chain: Y
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.683 117.939 119.598 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.34 Å
ligand EDO, SFG enzyme Transferase E.C.2.1.1.72 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • site-specific DNA-methyltran...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (266 Kb) [Save to disk]
  • Biological Unit Coordinates (6pbd.pdb1.gz) 257 Kb
  • LPC: Ligand-Protein Contacts for 6PBD
  • CSU: Contacts of Structural Units for 6PBD
  • Structure Factors (801 Kb)
  • Retrieve 6PBD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PBD from S2C, [Save to disk]
  • View 6PBD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6PBD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6pbd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6pbd_A] [6pbd_X] [6pbd_Y] [6pbd_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6PBD
  • Community annotation for 6PBD at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science