6PCL Hydrolase date Jun 17, 2019
title Crystal Structure Of Human Diphosphoinositol Polyphosphate Phosphohydrolase 1 In Complex With 5-Ip7
authors D.E.Dollins, J.Neubauer, J.Dong, J.D.York
compound source
Molecule: Diphosphoinositol Polyphosphate Phosphohydrolase
Chain: A
Fragment: Residues 1-148
Synonym: Dipp-1,Diadenosine 5',5'''-P1,P6-Hexaphosphate Hyd Nucleoside Diphosphate-Linked Moiety X Motif 3,Nudix Motif
Ec: 3.6.1.52,3.6.1.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudt3, Dipp, Dipp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.143 R_Free 0.161
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.560 59.576 62.358 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand CL, I7P, MG enzyme Hydrolase E.C.3.6.1.52 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (6pcl.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 6PCL
  • CSU: Contacts of Structural Units for 6PCL
  • Structure Factors (239 Kb)
  • Retrieve 6PCL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PCL from S2C, [Save to disk]
    • View 6PCL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6PCL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6pcl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6PCL
  • Community annotation for 6PCL at PDBWiki (http://pdbwiki.org)

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