6PL8 Dna Binding Protein Dna date Jun 30, 2019
title Structure Of Human Dna Polymerase Eta Complexed With 8oa In Template Base Paired With Incoming Non-Hydrolyzable Ttp
authors M.C.Koag, S.Lee
compound source
Molecule: Dna Polymerase Eta
Chain: A
Synonym: Rad30 Homolog A,Xeroderma Pigmentosum Variant Type
Ec: 2.7.7.7
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polh, Rad30, Rad30a, Xpv
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Cpaptp(A38)Paptpgpapcpgpcpt
Chain: T
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (5'-D(Apgpcpgptpcpapt)-3')
Chain: P
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 61
R_factor 0.182 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.705 98.705 81.719 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.17 Å
ligand 1FZ, A38, GOL, MG enzyme Transferase E.C.2.7.7.7 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (6pl8.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 6PL8
  • CSU: Contacts of Structural Units for 6PL8
  • Structure Factors (210 Kb)
  • Retrieve 6PL8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PL8 from S2C, [Save to disk]
    • View 6PL8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6PL8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6pl8_A] [6pl8_T] [6pl8_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6PL8
  • Community annotation for 6PL8 at PDBWiki (http://pdbwiki.org)

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