6PLC Dna Binding Protein Dna date Jun 30, 2019
title Structure Of Human Dna Polymerase Eta Complexed With 8oa In Template Base Paired With Incoming Non-Hydrolyzable Gtp
authors M.C.Koag, S.Lee
compound source
Molecule: Dna Polymerase Eta
Chain: A
Synonym: Rad30 Homolog A,Xeroderma Pigmentosum Variant Type
Ec: 2.7.7.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polh, Rad30, Rad30a, Xpv
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Cpaptp(A38)Paptpgpapcpgpcpt
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (5'-D(Apgpcpgptpcpapt)-3')
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 61
R_factor 0.179 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.447 98.447 81.856 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand A38, GOL, MG, XG4 enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMutagenesis mechanism of the major oxidative adenine lesion 7,8-dihydro-8-oxoadenine., Koag MC, Jung H, Lee S, Nucleic Acids Res. 2020 Apr 13. pii: 5819599. doi: 10.1093/nar/gkaa193. PMID:32282906
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (6plc.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 6PLC
  • CSU: Contacts of Structural Units for 6PLC
  • Structure Factors (141 Kb)
  • Retrieve 6PLC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PLC from S2C, [Save to disk]
  • View 6PLC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6PLC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6plc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6plc_T] [6plc_A] [6plc_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6PLC
  • Community annotation for 6PLC at PDBWiki (http://pdbwiki.org)

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