6PLH Immune System date Jun 30, 2019
title Fab Fragment Complexed With C-Mannosylated Tryptophan Peptid
authors A.John, M.A.Jarva, E.D.Goddard-Borger
compound source
Molecule: Fab 5g12 Light Chain
Chain: A
 Organism_scientific: Mus Musculus
Organism_taxid: 10090

Molecule: Fab 5g12 Heavy Chain
Chain: B
Organism_scientific: Mus Musculus
Organism_taxid: 10090

Molecule: Interleukin-21 Receptor
Chain: C
Fragment: Unp Residues 202-232
Synonym: Il-21r,Novel Interleukin Receptor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il21r, Nilr, Unq3121pro10273
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 1 21 1
R_factor 0.189 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.232 89.892 59.317 90.00 95.94 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand MAN, PCA, PO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (6plh.pdb1.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 6PLH
  • CSU: Contacts of Structural Units for 6PLH
  • Structure Factors (2335 Kb)
  • Retrieve 6PLH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PLH from S2C, [Save to disk]
    • View 6PLH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6PLH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6plh_C] [6plh_B] [6plh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6PLH
  • Community annotation for 6PLH at PDBWiki (http://pdbwiki.org)

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