6PTB Immune System date Jul 15, 2019
title Crystal Structure Of Ilnamiaki Peptide Bound To Hla-A2
authors G.L.J.Keller, A.Arbuiso, B.M.Baker
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A, D
Fragment: Unp Residues 25-299
Synonym: Mhc Class I Antigen A2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1-Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1

Molecule: Beta-2-Microglobulin
Chain: B, E
Fragment: Unp Residues 21-119
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1-Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1

Molecule: Haus Augmin-Like Complex Subunit 3
Chain: C, F
Fragment: Unp Residues 154-162
Engineered: Yes
Mutation: Yes
Other_details: Processed Peptide Fragment From Full-Length Containing Snp, Derived From 2098 Mel Cell Line

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor 0.193 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.676 63.671 75.175 81.47 75.85 77.23
method X-Ray Diffractionresolution 2.15 Å
Gene
Ontology
ChainFunctionProcessComponent
E, B
  • cellular response to iron io...

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  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (6ptb.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (6ptb.pdb2.gz) 71 Kb
  • CSU: Contacts of Structural Units for 6PTB
  • Structure Factors (1253 Kb)
  • Retrieve 6PTB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PTB from S2C, [Save to disk]
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  • Visual 3D analysis of 6PTB
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ptb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ptb_A] [6ptb_B] [6ptb_F] [6ptb_D] [6ptb_C] [6ptb_E]
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  • Community annotation for 6PTB at PDBWiki (http://pdbwiki.org)

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