6PTE Immune System date Jul 15, 2019
title Crystal Structure Of Ilnamitki Peptide Bound To Hla-A2
authors A.R.Smith, A.Arbuiso, G.L.J.Keller, B.M.Baker
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A, E, H, K
Fragment: Unp Residues 25-299
Synonym: Mhc Class I Antigen A2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1-Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1

Molecule: Beta-2-Microglobulin
Chain: B, F, I, L
Fragment: Unp Residues 21-119
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1-Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1

Molecule: Haus Augmin-Like Complex Subunit 3
Chain: C, D, G, J
Fragment: Unp Residues 154-162
Engineered: Yes
Other_details: Processed Peptide Fragment From Full-Length Containing Snp, Derived From 2098 Mel Cell Line

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor 0.159 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.429 84.106 85.363 90.01 90.06 90.02
method X-Ray Diffractionresolution 1.90 Å
Gene
Ontology
ChainFunctionProcessComponent
F, I, L, B
  • cellular response to iron io...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (565 Kb) [Save to disk]
  • Biological Unit Coordinates (6pte.pdb1.gz) 141 Kb
  • Biological Unit Coordinates (6pte.pdb2.gz) 143 Kb
  • Biological Unit Coordinates (6pte.pdb3.gz) 141 Kb
  • Biological Unit Coordinates (6pte.pdb4.gz) 142 Kb
  • CSU: Contacts of Structural Units for 6PTE
  • Structure Factors (3014 Kb)
  • Retrieve 6PTE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PTE from S2C, [Save to disk]
  • View 6PTE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6PTE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6pte from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6pte_J] [6pte_B] [6pte_C] [6pte_H] [6pte_K] [6pte_I] [6pte_F] [6pte_D] [6pte_G] [6pte_A] [6pte_E] [6pte_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6PTE
  • Community annotation for 6PTE at PDBWiki (http://pdbwiki.org)

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