6PUP Flavoprotein date Jul 18, 2019
title 1.9 A Crystal Structure Of Flavodoxin-Like Domain Of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwy Synthase Tyw1 In Complex With Fmn
authors L.Sjekloca, A.R.Ferre D'Amare
compound source
Molecule: Wybutosine Biosynthesis Protein Tyw1
Chain: A
Fragment: Flavodoxin-Like Domain, Residues 76-251
Engineered: Yes
 Organism_scientific: Schizosaccharomyces Japonicus (Strain Fy16936);
Organism_common: Fission Yeast
Organism_taxid: 402676
Strain: Yfs275 Fy16936
Gene: Sjag_04265
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.170 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.268 58.632 62.520 90.00 118.71 90.00
method X-Ray Diffractionresolution 1.89 Å
ligand FMN, MN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (6pup.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 6PUP
  • CSU: Contacts of Structural Units for 6PUP
  • Structure Factors (153 Kb)
  • Retrieve 6PUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PUP from S2C, [Save to disk]
    • View 6PUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6PUP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6pup_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6PUP
  • Community annotation for 6PUP at PDBWiki (http://pdbwiki.org)

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