6PUT Viral Protein Dna date Jul 18, 2019
title Structure Of Hiv Cleaved Synaptic Complex (Csc) Intasome Bou Calcium
authors D.Lyumkis, I.K.Jozwik, D.Passos
compound source
Molecule: Chimeric Sso7d And Hiv-1 Integrase
Chain: A, B, C, D
Synonym: 7 Kda Dna-Binding Protein D,Sso7d
Engineered: Yes
 Organism_scientific: Saccharolobus Solfataricus (Strain Atc Dsm 1617 Jcm 11322 P2), Human Immunodeficiency Virus 1;
Organism_taxid: 273057, 11676
Strain: Atcc 35092 Dsm 1617 Jcm 11322 P2
Gene: Sso7d, Sso7d-1, Sso10610
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Viral Dna Transferred Strand
Chain: F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676

Molecule: Viral Dna Non-Transferred Strand
Chain: E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.90 Å
ligand CA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • endoribonuclease activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (6put.pdb1.gz) 218 Kb
  • LPC: Ligand-Protein Contacts for 6PUT
  • CSU: Contacts of Structural Units for 6PUT
  • Retrieve 6PUT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PUT from S2C, [Save to disk]
    • View 6PUT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6PUT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6put_E] [6put_C] [6put_F] [6put_D] [6put_B] [6put_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6PUT
  • Community annotation for 6PUT at PDBWiki (http://pdbwiki.org)

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