6Q05 Viral Protein date Aug 01, 2019
title Mers-Cov S Structure In Complex With Sialyl-Lewisx
authors Y.J.Park, A.C.Walls, Z.Wang, M.Sauer, W.Li, M.A.Tortorici, B.J.Bos F.D.Dimaio, D.Veesler, Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
compound source
Molecule: Spike Glycoprotein
Chain: A, B, C
Synonym: S Glycoprotein,E2,Peplomer Protein
Engineered: Yes
 Organism_scientific: Human Betacoronavirus 2c Emc2012
Organism_taxid: 1235996
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.80 Å
ligand BMA, FOL, FUC, GAL, MAN, NAG, SIA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (577 Kb) [Save to disk]
  • Biological Unit Coordinates (6q05.pdb1.gz) 556 Kb
  • LPC: Ligand-Protein Contacts for 6Q05
  • CSU: Contacts of Structural Units for 6Q05
  • Retrieve 6Q05 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Q05 from S2C, [Save to disk]
    • View 6Q05 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6Q05
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6q05_A] [6q05_B] [6q05_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6Q05
  • Community annotation for 6Q05 at PDBWiki (http://pdbwiki.org)

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