6Q0C Hydrolase Dna date Aug 01, 2019
title Muty Adenine Glycosylase Bound To Dna Containing A Transitio Analog (1n) Paired With Undamaged Dg
authors V.L.O'Shea Murray, L.P.Russelburg, M.P.Horvath, S.S.David
compound source
Molecule: Ag-Specific Adenine Glycosylase
Chain: A
Ec: 3.2.2.31
Engineered: Yes
 Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Gene: Muty
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Dna (5'-D(Apapgpapcpgptpgpgpapc)-3')
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Pgptpcpcpap(Nr1)Pgptpcpt)-3')
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.247 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.860 86.140 141.170 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA, EDO, NR1, SF4 enzyme Hydrolase E.C.3.2.2.31 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (6q0c.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 6Q0C
  • CSU: Contacts of Structural Units for 6Q0C
  • Structure Factors (345 Kb)
  • Retrieve 6Q0C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Q0C from S2C, [Save to disk]
    • View 6Q0C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6Q0C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6q0c_C] [6q0c_B] [6q0c_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6Q0C
  • Community annotation for 6Q0C at PDBWiki (http://pdbwiki.org)

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