6Q0R Ligase date Aug 02, 2019
title Structure Of Ddb1-Dda1-Dcaf15 Complex Bound To E7820 And Rbm
authors T.Faust, H.Yoon, R.P.Nowak, K.A.Donovan, Z.Li, Q.Cai, N.A.Eleuteri N.S.Gray, E.S.Fischer
compound source
Molecule: Dna Damage-Binding Protein 1
Chain: A
Fragment: Internal Deletion Of The Bpb Domain
Synonym: Ddb P127 Subunit,Dna Damage-Binding Protein A,Ddba Specific Dna-Binding Protein 1,Hbv X-Associated Protein 1,X Damaged Dna-Binding Factor,Uv-Damaged Dna-Binding Protein 1 Xpe-Binding Factor,Xpe-Bf,Xeroderma Pigmentosum Group E-Com Protein,Xpce;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ddb1, Xap1
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Ddb1- And Cul4-Associated Factor 15
Chain: B
Fragment: N-Terminal Domain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dcaf15, C19orf72
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Ddb1- And Cul4-Associated Factor 15
Chain: C
Fragment: C-Terminal Domain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dcaf15, C19orf72
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Rna-Binding Protein 39
Chain: D
Fragment: Rrm2 Domain
Synonym: Caper Alpha,Hepatocellular Carcinoma Protein 1,Rna Motif Protein 39,Rna-Binding Region-Containing Protein 2,Sp Factor Hcc1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbm39, Hcc1, Rnpc2
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Det1- And Ddb1-Associated Protein 1
Chain: E
Synonym: Placenta Cross-Immune Reaction Antigen 1,Pcia-1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dda1, C19orf58, Pcia1
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.108 93.600 258.439 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A


C, B


D


E


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (457 Kb) [Save to disk]
  • Biological Unit Coordinates (6q0r.pdb1.gz) 447 Kb
  • CSU: Contacts of Structural Units for 6Q0R
  • Structure Factors (2665 Kb)
  • Retrieve 6Q0R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Q0R from S2C, [Save to disk]
  • View 6Q0R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Q0R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6q0r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6q0r_A] [6q0r_C] [6q0r_B] [6q0r_D] [6q0r_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Q0R
  • Community annotation for 6Q0R at PDBWiki (http://pdbwiki.org)

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