6Q1V Human DNA Ligase 1 (E592R) Bound to an Adenylated, hydroxyl terminated DNA nick date
authors Schellenberg, M.J., Williams, R.S., Tumbale, P.S., Riccio, A.A.
compound source
symmetry
R_factor
R_Free 0.1936
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand ACT, AMP, PEG, TRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (381 Kb) [Save to disk]
  • Biological Unit Coordinates (6q1v.pdb1.gz) 376 Kb
  • LPC: Ligand-Protein Contacts for 6Q1V
  • CSU: Contacts of Structural Units for 6Q1V
  • Structure Factors (2244 Kb)
  • Retrieve 6Q1V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Q1V from S2C, [Save to disk]
  • View 6Q1V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Q1V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6q1v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6q1v_B] [6q1v_D] [6q1v_C] [6q1v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Q1V
  • Community annotation for 6Q1V at PDBWiki (http://pdbwiki.org)

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