6Q3W Transferase date Dec 04, 2018
title Structure Of Human Galactokinase 1 Bound With Ethyl 1-(2-Pyr Piperidinecarboxylate
authors S.R.Mackinnon, G.A.Bezerra, M.Zhang, W.Foster, T.Krojer, J.Branda A.Douangamath, C.Arrowsmith, A.Edwards, C.Bountra, P.Brennan, K. W.W.Yue
compound source
Molecule: Galactokinase
Chain: A, B, C, D
Synonym: Galactose Kinase
Ec: 2.7.1.6
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Galk1, Galk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3
Expression_system_plasmid: Pnic24-Bsa
symmetry Space Group: P 1 21 1
R_factor 0.232 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.262 114.807 120.818 90.00 100.49 90.00
method X-Ray Diffractionresolution 1.96 Å
ligand
enzyme Transferase E.C.2.7.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (476 Kb) [Save to disk]
  • Biological Unit Coordinates (6q3w.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (6q3w.pdb2.gz) 121 Kb
  • Biological Unit Coordinates (6q3w.pdb3.gz) 123 Kb
  • Biological Unit Coordinates (6q3w.pdb4.gz) 110 Kb
  • CSU: Contacts of Structural Units for 6Q3W
  • Structure Factors (5795 Kb)
  • Retrieve 6Q3W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Q3W from S2C, [Save to disk]
  • View 6Q3W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Q3W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6q3w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6q3w_C] [6q3w_A] [6q3w_D] [6q3w_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Q3W
  • Community annotation for 6Q3W at PDBWiki (http://pdbwiki.org)

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