6Q4V Dna Binding Protein date Dec 06, 2018
title Klentaq Dna Polymerase In Complex With Datp
authors H.M.Kropp, K.Diederichs, A.Marx
compound source
Molecule: Dna Polymerase I, Thermostable
Chain: A
Synonym: Taq Polymerase 1
Ec: 2.7.7.7
Engineered: Yes
Organism_scientific: Thermus Aquaticus
Organism_taxid: 271
Gene: Pola, Pol1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Gpapcpcpapcpgpgpcpcpap(Doc)
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Apapcptpgptpgpgpcpcpgptpgp 3');
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 31 2 1
R_factor 0.186 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.482 109.482 91.255 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.01 Å
ligand DOC, DTP, EDO, MG, MN enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of an archaeal B-family DNA polymerase in complex with a chemically modified nucleotide., Marx A, Kropp H, Diederichs K, Angew Chem Int Ed Engl. 2019 Feb 14. doi: 10.1002/anie.201900315. PMID:30761722
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (302 Kb) [Save to disk]
  • Biological Unit Coordinates (6q4v.pdb1.gz) 294 Kb
  • LPC: Ligand-Protein Contacts for 6Q4V
  • CSU: Contacts of Structural Units for 6Q4V
  • Structure Factors (1152 Kb)
  • Retrieve 6Q4V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Q4V from S2C, [Save to disk]
  • View 6Q4V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Q4V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6q4v_A] [6q4v_B] [6q4v_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Q4V
  • Community annotation for 6Q4V at PDBWiki (http://pdbwiki.org)

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