6Q5Q De Novo Protein date Dec 09, 2018
title Crystal Structure Of A Cc-Hex Mutant That Forms An Antiparal Helix Coiled Coil Cc-Hex-Kgeb
authors N.R.Zaccai, G.G.Rhys, C.W.Wood, J.L.Beesley, R.L.Brady, D.N.Woolf
compound source
Molecule: Cc-Hex-Kgeb
Chain: A
Engineered: Yes
Other_details: Antiparallel Four-Helix Coiled Coil
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: I 2 2 2
R_factor 0.135 R_Free 0.147
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.570 29.350 55.722 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.08 Å
ligand ACE, NH2, TLA enzyme
Primary referenceNavigating the structural landscape of de novo alpha-helical bundles., Rhys GG, Wood CW, Beesley JL, Zaccai NR, Burton A, Brady RL, Thomson AR, Woolfson DN, J Am Chem Soc. 2019 May 8. doi: 10.1021/jacs.8b13354. PMID:31066556
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (6q5q.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 6Q5Q
  • CSU: Contacts of Structural Units for 6Q5Q
  • Structure Factors (462 Kb)
  • Retrieve 6Q5Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Q5Q from S2C, [Save to disk]
  • View 6Q5Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Q5Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6q5q_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Q5Q
  • Community annotation for 6Q5Q at PDBWiki (http://pdbwiki.org)

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