6Q8I Splicing date Dec 14, 2018
title Nterminal Domain Of Human Smu1 In Complex With Human Redmid
authors L.Tengo, L.Le Corre, G.Fournier, U.Ashraf, P.Busca, M.A.Rameix-W C.Gravier-Pelletier, R.W.H.Ruigrok, Y.Jacob, P.O.Vidalain, N.Pietrancosta, N.Naffakh, A.A.Mccarthy, T.Crepin
compound source
Molecule: Wd40 Repeat-Containing Protein Smu1
Chain: A, B, E, F, I, J, M, N
Synonym: Smu-1 Suppressor Of Mec-8 And Unc-52 Protein Homol
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smu1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Red
Chain: C, D, G, H, L, O, P
Synonym: Cytokine Ik,Ik Factor,Protein Rer
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ik, Red, Rer
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Red
Chain: K
Synonym: Cytokine Ik,Ik Factor,Protein Rer
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ik, Red, Rer
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.256 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.983 68.163 145.296 90.00 109.40 90.00
method X-Ray Diffractionresolution 3.17 Å
Gene
Ontology
ChainFunctionProcessComponent
F, N, E, M, A, J, B, I


K, C, L, O, P, H, D, G


Primary referenceDestabilization of the human RED-SMU1 splicing complex as a basis for host-directed antiinfluenza strategy., Ashraf U, Tengo L, Le Corre L, Fournier G, Busca P, McCarthy AA, Rameix-Welti MA, Gravier-Pelletier C, Ruigrok RWH, Jacob Y, Vidalain PO, Pietrancosta N, Crepin T, Naffakh N, Proc Natl Acad Sci U S A. 2019 May 10. pii: 1901214116. doi:, 10.1073/pnas.1901214116. PMID:31076555
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (607 Kb) [Save to disk]
  • Biological Unit Coordinates (6q8i.pdb1.gz) 151 Kb
  • Biological Unit Coordinates (6q8i.pdb2.gz) 147 Kb
  • Biological Unit Coordinates (6q8i.pdb3.gz) 153 Kb
  • Biological Unit Coordinates (6q8i.pdb4.gz) 143 Kb
  • CSU: Contacts of Structural Units for 6Q8I
  • Structure Factors (1361 Kb)
  • Retrieve 6Q8I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Q8I from S2C, [Save to disk]
  • View 6Q8I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Q8I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6q8i_B] [6q8i_M] [6q8i_A] [6q8i_O] [6q8i_D] [6q8i_K] [6q8i_P] [6q8i_N] [6q8i_C] [6q8i_J] [6q8i_H] [6q8i_F] [6q8i_I] [6q8i_E] [6q8i_G] [6q8i_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Q8I
  • Community annotation for 6Q8I at PDBWiki (http://pdbwiki.org)

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