6QAV Transferase date Dec 19, 2018
title Crystal Structure Of Ulk2 In Complexed With Mrt68921
authors A.Chaikuad, C.H.Arrowsmith, A.M.Edwards, C.Bountra, S.Knapp, Stru Genomics Consortium, Structural Genomics Consortium (Sgc)
compound source
Molecule: Serinethreonine-Protein Kinase Ulk2
Chain: A, B, C, D
Synonym: Unc-51-Like Kinase 2
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ulk2, Kiaa0623
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.195 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.648 69.050 107.710 90.00 97.93 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand EDO, GOL, HVH, NA enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceConservation of structure, function and inhibitor binding in UNC-51-like kinase 1 and 2 (ULK1/2)., Chaikuad A, Koschade SE, Stolz A, Zivkovic K, Pohl C, Shaid S, Ren H, Lambert LJ, Cosford NDP, Brandts CH, Knapp S, Biochem J. 2019 Feb 19. pii: BCJ20190038. doi: 10.1042/BCJ20190038. PMID:30782972
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (373 Kb) [Save to disk]
  • Biological Unit Coordinates (6qav.pdb1.gz) 186 Kb
  • Biological Unit Coordinates (6qav.pdb2.gz) 182 Kb
  • LPC: Ligand-Protein Contacts for 6QAV
  • CSU: Contacts of Structural Units for 6QAV
  • Structure Factors (4656 Kb)
  • Retrieve 6QAV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QAV from S2C, [Save to disk]
  • View 6QAV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6QAV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qav_D] [6qav_A] [6qav_B] [6qav_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6QAV
  • Community annotation for 6QAV at PDBWiki (http://pdbwiki.org)

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