6QHD Transcription date Jan 16, 2019
title Lysine Acetylated And Tyrosine Phosphorylated Stat3 In A Com Dna
authors E.Arbely, Y.Belo, A.Shahar, R.Zarivach
compound source
Molecule: Signal Transducer And Activator Of Transcription
Chain: A, B
Synonym: Acute-Phase Response Factor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Stat3, Aprf
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Apapgpaptptptpapcpgpgpgpapapaptpgpc)-3'
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Murine Adenovirus 1
Organism_taxid: 10530

Molecule: Dna (5'- D(Tpgpcpaptptptpcpcpcpgptpapapaptpcpt)-3'
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Murine Adenovirus 1
Organism_taxid: 10530
symmetry Space Group: P 41
R_factor 0.294 R_Free 0.343
crystal
cell
length a length b length c angle alpha angle beta angle gamma
175.491 175.491 79.078 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
Primary referenceUnexpected implications of STAT3 acetylation revealed by genetic encoding of acetyl-lysine., Belo Y, Mielko Z, Nudelman H, Afek A, Ben-David O, Shahar A, Zarivach R, Gordan R, Arbely E, Biochim Biophys Acta Gen Subj. 2019 Jun 3;1863(9):1343-1350. doi:, 10.1016/j.bbagen.2019.05.019. PMID:31170499
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (407 Kb) [Save to disk]
  • Biological Unit Coordinates (6qhd.pdb1.gz) 399 Kb
  • CSU: Contacts of Structural Units for 6QHD
  • Structure Factors (1980 Kb)
  • Retrieve 6QHD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QHD from S2C, [Save to disk]
  • View 6QHD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6QHD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6qhd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qhd_D] [6qhd_C] [6qhd_B] [6qhd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6QHD
  • Community annotation for 6QHD at PDBWiki (http://pdbwiki.org)

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