6QIG Blood Clotting date Jan 18, 2019
title Metalloproteinase
authors H.J.Kim, J.Emsley
compound source
Molecule: Antibody Light Chain
Chain: L
Other_details: Antibody Light Chain
 Organism_scientific: Rattus Norvegicus
Organism_taxid: 10116

Molecule: Antibody Heavy Chain
Chain: H
Other_details: Antibody Heavy Chain
Organism_scientific: Rattus Norvegicus
Organism_taxid: 10116

Molecule: A Disintegrin And Metalloproteinase With Thrombos Motifs 13;
Chain: A
Synonym: Adamts-13,Von Willebrand Factor-Cleaving Protease, Cleaving Protease;
Ec: 3.4.24.87
Engineered: Yes
Other_details: E225q
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adamts13, C9orf8, Unq6102pro20085
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
symmetry Space Group: P 32 2 1
R_factor 0.206 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.532 87.532 407.342 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand BMA, CA, CL, FUC, GOL, MAN, NAG, PEG, ZN enzyme Hydrolase E.C.3.4.24.87 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (6qig.pdb1.gz) 167 Kb
  • LPC: Ligand-Protein Contacts for 6QIG
  • CSU: Contacts of Structural Units for 6QIG
  • Structure Factors (1360 Kb)
  • Retrieve 6QIG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QIG from S2C, [Save to disk]
    • View 6QIG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6QIG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qig_L] [6qig_A] [6qig_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6QIG
  • Community annotation for 6QIG at PDBWiki (http://pdbwiki.org)

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