6QLV	Transferase	date	Feb 01, 2019
title	Crystal Structure Of W200h Ubix In Complex With A Geranyl-Fm Adduct
authors	S.A.Marshall, D.Leys
compound		source
Molecule: Flavin Prenyltransferase Ubix Chain: A, B, C, D, E, F, G, H, I, J, K, L Ec: 2.5.1.129 Engineered: Yes		Organism_scientific: Pseudomonas Aeruginosa Organism_taxid: 287 Gene: Ubix, C0044_29760, C8257_05245, Caz10_26235, Cgu42_07 Dt376_15100, Dz940_19110, Dz962_23875, Nctc13719_00955, Paerug_e15_london_28_01_14_05236, Pamh19_1010, Rw109_rw109_ Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 2	R_factor 0.178 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 161.533 164.931 102.527 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.39 Å
ligand	ACT, FMN, HJN, HZZ, NA, PO4	enzyme	Transferase E.C.2.5.1.129 BRENDA
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L
Primary reference	The UbiX flavin prenyltransferase reaction mechanism resembles class I terpene cyclase chemistry., Marshall SA, Payne KAP, Fisher K, White MD, Ni Cheallaigh A, Balaikaite A, Rigby SEJ, Leys D, Nat Commun. 2019 May 29;10(1):2357. doi: 10.1038/s41467-019-10220-1. PMID:31142738

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (752 Kb) [Save to disk] Biological Unit Coordinates (6qlv.pdb1.gz) 729 Kb LPC: Ligand-Protein Contacts for 6QLV CSU: Contacts of Structural Units for 6QLV Structure Factors (781 Kb) Retrieve 6QLV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6QLV from S2C, [Save to disk]

View 6QLV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6QLV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6qlv_I] [6qlv_D] [6qlv_E] [6qlv_A] [6qlv_J] [6qlv_H] [6qlv_B] [6qlv_C] [6qlv_F] [6qlv_K] [6qlv_G] [6qlv_L] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6QLV

Community annotation for 6QLV at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---