6QOY Hydrolase date Feb 13, 2019
title Crystal Structure Of L1 Protease Lysobacter Sp. Xl1 In Compl Aebsf
authors A.Gabdulkhakov, S.Tishchenko, I.Kudryakova, A.Afoshin, N.Vasilye
compound source
Molecule: Lytic Endopeptidase Preproenzyme
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Lysobacter Sp. (Strain Xl1)
Organism_taxid: 186334
Strain: Xl1
Gene: Alpa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Paproz
symmetry Space Group: P 1 21 1
R_factor 0.200 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.855 122.553 78.988 90.00 98.64 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand AES, CL, GOL, JAT, PEG, PGE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (6qoy.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (6qoy.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (6qoy.pdb3.gz) 32 Kb
  • Biological Unit Coordinates (6qoy.pdb4.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 6QOY
  • CSU: Contacts of Structural Units for 6QOY
  • Structure Factors (2695 Kb)
  • Retrieve 6QOY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QOY from S2C, [Save to disk]
    • View 6QOY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6QOY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qoy_B] [6qoy_D] [6qoy_C] [6qoy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6QOY
  • Community annotation for 6QOY at PDBWiki (http://pdbwiki.org)

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