6QOY Crystal structure of L1 protease Lysobacter sp. XL1 in complex with AEBSF date
authors Gabdulkhakov, A., Tishchenko, S., Kudryakova, I., Afoshin, A., Vasilyeva, N.
compound source
symmetry
R_factor
R_Free 0.2400
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand AES, CL, GOL, JAT, PEG, PGE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (6qoy.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (6qoy.pdb2.gz) 35 Kb
  • Biological Unit Coordinates (6qoy.pdb3.gz) 33 Kb
  • Biological Unit Coordinates (6qoy.pdb4.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 6QOY
  • CSU: Contacts of Structural Units for 6QOY
  • Structure Factors (2695 Kb)
  • Retrieve 6QOY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QOY from S2C, [Save to disk]
  • View 6QOY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6QOY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6qoy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qoy_B] [6qoy_D] [6qoy_C] [6qoy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6QOY
  • Community annotation for 6QOY at PDBWiki (http://pdbwiki.org)

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