6QPF Rna Binding Protein date Feb 13, 2019
title Influenza A Virus Polymerase Heterotrimer Aduckfujian012
authors H.T.Fan, J.R.Keown, E.Fodor, J.M.Grimes
compound source
Molecule: Polymerase Acidic Protein
Chain: A, D, G, J
Synonym: Rna-Directed Rna Polymerase Subunit P2
Ec: 3.1.-.-
Engineered: Yes
Organism_scientific: Influenza A Virus
Organism_common: Aduckfujian012002(H5n1)
Organism_taxid: 274827
Gene: Pa
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Rna-Directed Rna Polymerase Catalytic Subunit
Chain: B, E, H, K
Synonym: Polymerase Basic Protein 1,Pb1,Rna-Directed Rna Po Subunit P1;
Ec: 2.7.7.48
Engineered: Yes

Organism_scientific: Influenza A Virus
Organism_common: Aduckfujian012002(H5n1)
Organism_taxid: 274827
Gene: Pb1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Polymerase Basic Protein 2
Chain: C, F, I, L
Synonym: Rna-Directed Rna Polymerase Subunit P3
Engineered: Yes

Organism_scientific: Influenza A Virus
Organism_common: Aduckfujian012002(H5n1)
Organism_taxid: 274827
Gene: Pb2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 1 2 1
R_factor 0.277 R_Free 0.323
crystal
cell
length a length b length c angle alpha angle beta angle gamma
337.122 192.859 235.688 90.00 91.46 90.00
method X-Ray Diffractionresolution 3.63 Å
ligand
enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, J, D, G
  • nuclease activity
  • endonuclease activity


  • F, C, I, L
  • RNA-directed 5'-3' RNA polym...


  • K, E, B, H
  • RNA-directed 5'-3' RNA polym...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1383 Kb) [Save to disk]
  • Biological Unit Coordinates (6qpf.pdb1.gz) 357 Kb
  • Biological Unit Coordinates (6qpf.pdb2.gz) 356 Kb
  • Biological Unit Coordinates (6qpf.pdb3.gz) 355 Kb
  • Biological Unit Coordinates (6qpf.pdb4.gz) 355 Kb
  • CSU: Contacts of Structural Units for 6QPF
  • Structure Factors (3590 Kb)
  • Retrieve 6QPF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QPF from S2C, [Save to disk]
  • View 6QPF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6QPF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qpf_L] [6qpf_F] [6qpf_E] [6qpf_B] [6qpf_C] [6qpf_D] [6qpf_K] [6qpf_G] [6qpf_A] [6qpf_J] [6qpf_I] [6qpf_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6QPF
  • Community annotation for 6QPF at PDBWiki (http://pdbwiki.org)

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