6QTU Plant Protein date Feb 25, 2019
title Crystal Structure Of Arabidopsis Wd40 Domain In Complex With Transcription Factor
authors M.Hothorn, K.Lau
compound source
Molecule: E3 Ubiquitin-Protein Ligase Cop1
Chain: A
Synonym: Constitutive Photomorphogenesis Protein 1,Ring-Typ Ubiquitin Transferase Cop1;
Ec: 2.3.2.27
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: Cop1, At2g32950, T21l14.11
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: B-Box Zinc Finger Protein 24
Chain: B
Synonym: Salt Tolerance Protein
Engineered: Yes
Synthetic: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
symmetry Space Group: P 21 21 21
R_factor 0.141 R_Free 0.176
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.679 54.992 102.664 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand CSO, GOL, MLI enzyme Transferase E.C.2.3.2.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]
  • Biological Unit Coordinates (6qtu.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 6QTU
  • CSU: Contacts of Structural Units for 6QTU
  • Structure Factors (2436 Kb)
  • Retrieve 6QTU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QTU from S2C, [Save to disk]
    • View 6QTU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6QTU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qtu_B] [6qtu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6QTU
  • Community annotation for 6QTU at PDBWiki (http://pdbwiki.org)

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