6QVG Transferase date Mar 01, 2019
title Human Shmt2 In Complex With Lometrexol
authors E.Scaletti, A.S.Jemth, T.Helleday, P.Stenmark
compound source
Molecule: Serine Hydroxymethyltransferase, Mitochondrial
Chain: A, B
Synonym: Shmt,Glycine Hydroxymethyltransferase,Serine Methy
Ec: 2.1.2.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Shmt2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.199 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.807 158.807 208.257 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.32 Å
ligand ACT, DDF, GLY, GOL, NA, PEG, PLP enzyme Transferase E.C.2.1.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • translation repressor activi...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (6qvg.pdb1.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 6QVG
  • CSU: Contacts of Structural Units for 6QVG
  • Structure Factors (2024 Kb)
  • Retrieve 6QVG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QVG from S2C, [Save to disk]
    • View 6QVG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6QVG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qvg_B] [6qvg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6QVG
  • Community annotation for 6QVG at PDBWiki (http://pdbwiki.org)

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