6QVY Dna Binding Protein date Mar 05, 2019
title The Transcriptional Regulator Prfa-A94v Mutant From Listeria Monocytogenes
authors M.Hall, C.Grundstrom, S.Hansen, K.Brannstrom, J.Johansson, A.E.Sa Eriksson
compound source
Molecule: Listeriolysin Regulatory Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Listeria Monocytogenes
Organism_taxid: 1639
Gene: Prfa_2, Dyz77_02819
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.149 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.516 88.571 115.955 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.69 Å
ligand IPA, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA novel growth based selection strategy identifies new constitutively active variants of the major virulence regulator PrfA in Listeria monocytogenes., Hansen S, Hall M, Grundstrom C, Brannstrom K, Sauer-Eriksson AE, Johansson J, J Bacteriol. 2020 Mar 16. pii: JB.00115-20. doi: 10.1128/JB.00115-20. PMID:32179627
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (6qvy.pdb1.gz) 169 Kb
  • LPC: Ligand-Protein Contacts for 6QVY
  • CSU: Contacts of Structural Units for 6QVY
  • Structure Factors (2215 Kb)
  • Retrieve 6QVY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QVY from S2C, [Save to disk]
    • View 6QVY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6QVY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qvy_B] [6qvy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6QVY
  • Community annotation for 6QVY at PDBWiki (http://pdbwiki.org)

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