6QZ3 Structural Genomics date Mar 11, 2019
title Structure Of Mhetase From Ideonella Sakaiensis
authors M.D.Allen, C.W.Johnson, B.C.Knott, G.T.Beckham, J.E.Mcgeehan
compound source
Molecule: Mono(2-Hydroxyethyl) Terephthalate Hydrolase
Chain: A
Synonym: Mhetase
Ec: 3.1.1.102
Engineered: Yes
Organism_scientific: Ideonella Sakaiensis (Strain 201-F6)
Organism_taxid: 1547922
Strain: 201-F6
Gene: Isf6_0224
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41
Expression_system_plasmid: Pcj136
symmetry Space Group: P 2 21 21
R_factor 0.162 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.368 89.016 91.643 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand BEZ, CA, MSE enzyme Hydrolase E.C.3.1.1.102 BRENDA
Primary referenceCharacterization and engineering of a two-enzyme system for plastics depolymerization., Knott BC, Erickson E, Allen MD, Gado JE, Graham R, Kearns FL, Pardo I, Topuzlu E, Anderson JJ, Austin HP, Dominick G, Johnson CW, Rorrer NA, Szostkiewicz CJ, Copie V, Payne CM, Woodcock HL, Donohoe BS, Beckham GT, McGeehan JE, Proc Natl Acad Sci U S A. 2020 Sep 28. pii: 2006753117. doi:, 10.1073/pnas.2006753117. PMID:32989159
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (6qz3.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 6QZ3
  • CSU: Contacts of Structural Units for 6QZ3
  • Structure Factors (3464 Kb)
  • Retrieve 6QZ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QZ3 from S2C, [Save to disk]
  • View 6QZ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6QZ3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qz3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6QZ3
  • Community annotation for 6QZ3 at PDBWiki (http://pdbwiki.org)

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