6R1U Structure of LSD2/NPAC-linker/nucleosome core particle complex: Class 2 date
authors Marabelli, C., Pilotto, S., Chittori, S., Subramaniam, S., Mattevi, A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.36
ligand FAD, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E, M


C, G


F, B


H, D


K


Primary referenceA Tail-Based Mechanism Drives Nucleosome Demethylation by the LSD2/NPAC Multimeric Complex., Marabelli C, Marrocco B, Pilotto S, Chittori S, Picaud S, Marchese S, Ciossani G, Forneris F, Filippakopoulos P, Schoehn G, Rhodes D, Subramaniam S, Mattevi A, Cell Rep. 2019 Apr 9;27(2):387-399.e7. doi: 10.1016/j.celrep.2019.03.061. PMID:30970244
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (349 Kb) [Save to disk]
  • Biological Unit Coordinates (6r1u.pdb1.gz) 339 Kb
  • LPC: Ligand-Protein Contacts for 6R1U
  • CSU: Contacts of Structural Units for 6R1U
  • Retrieve 6R1U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6R1U from S2C, [Save to disk]
    • View 6R1U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6R1U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6r1u from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6r1u_H] [6r1u_D] [6r1u_G] [6r1u_F] [6r1u_A] [6r1u_J] [6r1u_I] [6r1u_C] [6r1u_B] [6r1u_K] [6r1u_M] [6r1u_E] [6r1u_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6R1U
  • Community annotation for 6R1U at PDBWiki (http://pdbwiki.org)

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