6R1U | Gene Regulation | date | Mar 15, 2019 |
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title | Structure Of Lsd2npac-Linkernucleosome Core Particle Compl | ||||||||||||||||||||||||||
authors | C.Marabelli, S.Pilotto, S.Chittori, S.Subramaniam, A.Mattevi | ||||||||||||||||||||||||||
compound | source | ||||||||||||||||||||||||||
Molecule: Histone H3.2 Chain: A, E Engineered: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Plyss | ||||||||||||||||||||||||||
Molecule: Histone H4 Chain: B, F Engineered: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Plyss | ||||||||||||||||||||||||||
Molecule: Histone H2a Chain: C, G Engineered: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Gene: Hist1h2aj, Loc494591 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Plyss | ||||||||||||||||||||||||||
Molecule: Histone H2b 1.1 Chain: D, H Synonym: H2b1.1 Engineered: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Plyss | ||||||||||||||||||||||||||
Molecule: Dna (147-Mer) Chain: I Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||||||||||||||
Molecule: Dna (147-Mer) Chain: J Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||||||||||||||
Molecule: Lysine-Specific Histone Demethylase 1b Chain: K Synonym: Flavin-Containing Amine Oxidase Domain-Containing Lysine-Specific Histone Demethylase 2; Ec: 1.-.-.- Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kdm1b, Aof1, C6orf193, Lsd2 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Plyss | ||||||||||||||||||||||||||
Molecule: Putative Oxidoreductase Glyr1 Chain: L Synonym: 3-Hydroxyisobutyrate Dehydrogenase-Like Protein,Cy Like Nuclear Factor N-Pac,Glyoxylate Reductase 1 Homolog,Nu Protein Np60,Nuclear Protein Of 60 Kda; Ec: 1.-.-.- Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Glyr1, Hibdl, Np60 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 | ||||||||||||||||||||||||||
Molecule: Histone H3 Chain: M Engineered: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Gene: Xelaev_18002543mg Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Plyss | ||||||||||||||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | Electron Microscopy | resolution | 4.36 Å | ||||||||||||||||||||||||
ligand | FAD, ZN | enzyme | Oxidoreductase E.C.1 BRENDA | ||||||||||||||||||||||||
Gene Ontology |
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Primary reference | A Tail-Based Mechanism Drives Nucleosome Demethylation by the LSD2/NPAC Multimeric Complex., Marabelli C, Marrocco B, Pilotto S, Chittori S, Picaud S, Marchese S, Ciossani G, Forneris F, Filippakopoulos P, Schoehn G, Rhodes D, Subramaniam S, Mattevi A, Cell Rep. 2019 Apr 9;27(2):387-399.e7. doi: 10.1016/j.celrep.2019.03.061. PMID:30970244 |
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OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |