6R2L Immune System date Mar 18, 2019
title Nybr1-A2-Slskildtv
authors P.J.Rizkallah, D.K.Cole, M.Sami
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A
Synonym: Mhc Class I Antigen A2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Beta-2-Microglobulin
Chain: B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ser-Leu-Ser-Lys-Ile-Leu-Asp-Thr-Val
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: T Cell Receptor Alpha Variable 22,Human Nkt Tcr A Chain;
Chain: D
Synonym: Human Nkt Tcr Beta Chain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trav22, B2m, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: T Cell Receptor Beta Variable 11-2,Human Nkt Tcr Chain;
Chain: E
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trbv11-2, Tcrbv21s3a2n2t, B2m, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.210 99.330 111.440 90.00 90.50 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand EDO, EPE, GOL, PEG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (299 Kb) [Save to disk]
  • Biological Unit Coordinates (6r2l.pdb1.gz) 291 Kb
  • LPC: Ligand-Protein Contacts for 6R2L
  • CSU: Contacts of Structural Units for 6R2L
  • Structure Factors (2046 Kb)
  • Retrieve 6R2L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6R2L from S2C, [Save to disk]
    • View 6R2L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6R2L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6r2l_D] [6r2l_B] [6r2l_C] [6r2l_A] [6r2l_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6R2L
  • Community annotation for 6R2L at PDBWiki (http://pdbwiki.org)

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