6R3P Recombination date Mar 20, 2019
title Crystal Structure Of Human Dmc1 Atpase Domain
authors J.M.Dunce, O.R.Davies
compound source
Molecule: Meiotic Recombination Protein Dmc1lim15 Homolog
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dmc1, Dmc1h, Lim15
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Phat4
symmetry Space Group: I 4 2 2
R_factor 0.194 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
174.490 174.490 179.570 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (498 Kb) [Save to disk]
  • Biological Unit Coordinates (6r3p.pdb1.gz) 974 Kb
  • Biological Unit Coordinates (6r3p.pdb2.gz) 983 Kb
  • CSU: Contacts of Structural Units for 6R3P
  • Structure Factors (5881 Kb)
  • Retrieve 6R3P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6R3P from S2C, [Save to disk]
  • View 6R3P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6R3P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6r3p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6r3p_A] [6r3p_D] [6r3p_B] [6r3p_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6R3P
  • Community annotation for 6R3P at PDBWiki (http://pdbwiki.org)

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