OCA Atlas for 6R6H

6R6H

Ligase

date

Mar 27, 2019

title

Structural Basis Of Cullin-2 Ring E3 Ligase Regulation By Th Signalosome

authors

E.P.Morris, S.V.Faull, A.M.C.Lau, A.Politis, F.Beuron, N.Cronin

compound

source

Molecule: Cop9 Signalosome Complex Subunit 1
Chain: A
Synonym: Signalosome Subunit 1,G Protein Pathway Suppressor Jab1-Containing Signalosome Subunit 1,Protein Mfh;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gps1, Cops1, Csn1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Cop9 Signalosome Complex Subunit 2
Chain: B
Synonym: Signalosome Subunit 2,Alien Homolog,Jab1-Containin Signalosome Subunit 2,Thyroid Receptor-Interacting Protein 15;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cops2, Csn2, Trip15
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Cop9 Signalosome Complex Subunit 3
Chain: C
Synonym: Signalosome Subunit 3,Jab1-Containing Signalosome
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cops3, Csn3
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Cop9 Signalosome Complex Subunit 4
Chain: D
Synonym: Signalosome Subunit 4,Jab1-Containing Signalosome
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cops4, Csn4
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Cop9 Signalosome Complex Subunit 5
Chain: E
Synonym: Signalosome Subunit 5,Jun Activation Domain-Bindin 1;
Ec: 3.4.-.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cops5, Csn5, Jab1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Cop9 Signalosome Complex Subunit 6
Chain: F
Synonym: Signalosome Subunit 6,Jab1-Containing Signalosome Mov34 Homolog,Vpr-Interacting Protein,Hvip;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cops6, Csn6, Hvip
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Cop9 Signalosome Complex Subunit 8
Chain: H
Synonym: Signalosome Subunit 8,Cop9 Homolog,Hcop9,Jab1-Cont Signalosome Subunit 8;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cops8, Csn8
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Cullin-2
Chain: O
Synonym: Cul-2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cul2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Elongin-B
Chain: P
Synonym: Elob,Elongin 18 Kda Subunit,Rna Polymerase II Tran Factor Siii Subunit B,Siii P18,Transcription Elongation Fac Polypeptide 2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Elob, Tceb2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Eloc_human
Chain: Q
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Rbx1_human
Chain: R
Engineered: Yes

Molecule: Von Hippel-Lindau Disease Tumor Suppressor
Chain: V
Synonym: Protein G7,Pvhl
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vhl
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Cop9 Signalosome Complex Subunit 7b
Chain: G
Synonym: Signalosome Subunit 7b,Jab1-Containing Signalosome 7b;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cops7b, Csn7b
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

symmetry

Space Group: P 1

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
1.000	1.000	1.000	90.00	90.00	90.00

method

Electron Microscopy

resolution

8.40 Å

ligand

enzyme

Hydrolase E.C.3.4 BRENDA

Gene
Ontology

Chain	Function	Process	Component
A	GTPase inhibitor activity
B
C
D
E	translation initiation facto...
F
G
H
O
P
Q	ubiquitin-protein transferas...
R

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (655 Kb) [Save to disk]

Biological Unit Coordinates (6r6h.pdb1.gz) 645 Kb

LPC: Ligand-Protein Contacts for 6R6H

CSU: Contacts of Structural Units for 6R6H

Retrieve 6R6H in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6R6H from S2C, [Save to disk]

View 6R6H in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6R6H

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6r6h_R] [6r6h_F] [6r6h_B] [6r6h_E] [6r6h_V] [6r6h_P] [6r6h_O] [6r6h_D] [6r6h_G] [6r6h_H] [6r6h_C] [6r6h_A] [6r6h_Q]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 6R6H

Community annotation for 6R6H at PDBWiki (http://pdbwiki.org)

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