6R6U Lyase date Mar 28, 2019
title Crystal Structure Of Human Cis-Aconitate Decarboxylase
authors P.Lukat, F.Chen, K.Saile, K.Buessow, F.Pessler, W.Blankenfeldt
compound source
Molecule: Cis-Aconitate Decarboxylase
Chain: A, B
Synonym: Cad,Aconitate Decarboxylase,Aconitate Decarboxylas Aconitic Acid Decarboxylase,Immune-Responsive Gene 1 Protei
Ec: 4.1.1.6
Engineered: Yes
Other_details: Sequence Encoding Residues 4-461 Of Hcad (Ge Nm_001258406) Cys355 Shows Additional Electron Density Like Oxidation And Has Thus Been Modeled As Csd.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acod1, Irg1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codonplus Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcad29
symmetry Space Group: P 21 21 2
R_factor 0.145 R_Free 0.162
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.010 109.980 74.974 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.71 Å
ligand
enzyme Lyase E.C.4.1.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (453 Kb) [Save to disk]
  • Biological Unit Coordinates (6r6u.pdb1.gz) 445 Kb
  • CSU: Contacts of Structural Units for 6R6U
  • Structure Factors (1425 Kb)
  • Retrieve 6R6U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6R6U from S2C, [Save to disk]
  • View 6R6U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6R6U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6r6u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6r6u_B] [6r6u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6R6U
  • Community annotation for 6R6U at PDBWiki (http://pdbwiki.org)

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