6R8I Peptide Binding Protein date Apr 02, 2019
title Pp4r3a Evh1 Domain Bound To Fxxp Motif
authors Y.Ueki, T.Kruse, M.B.Weisser, G.N.Sundell, M.S.Yoo Larsen, B.Lope N.P.Jenkins, D.H.Garvanska, L.Cressey, G.Zhang, N.Davey, G.Monto Y.Ivarsson, A.Kettenbach, J.Nilsson
compound source
Molecule: Serinethreonine-Protein Phosphatase 4 Regulatory 3a;
Chain: A
Synonym: Smek Homolog 1
Engineered: Yes
Other_details: N-Terminal Residue S0 (Serine) Is A Remainde Introduced N-Terminal Tev Protease Cleavage Site And Not Pa Natural Pp4r3a Sequence. It Is Not Visible In The Structure D115 Was Built As An Alanine Due To Badly Visible Side Chai Density. Residues 116 Following Are Not Visible In The Stru
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppp4r3a, Kiaa2010, Pp4r3a, Smek1, Mstp033
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ser-Leu-Pro-Phe-Thr-Phe-Lys-Val-Pro-Ala-Pro-Pro-P Leu-Pro-Pro-Ser;
Chain: B
Engineered: Yes
Other_details: Model Peptide
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 43 21 2
R_factor 0.189 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.586 60.586 91.902 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.52 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (6r8i.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 6R8I
  • Structure Factors (444 Kb)
  • Retrieve 6R8I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6R8I from S2C, [Save to disk]
    • View 6R8I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6R8I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6r8i_A] [6r8i_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6R8I
  • Community annotation for 6R8I at PDBWiki (http://pdbwiki.org)

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