6R90 Cryo-EM structure of NCP-THF2(+1)-UV-DDB class A date
authors Matsumoto, S., Cavadini, S., Bunker, R.D., Thoma, N.H.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.50
ligand 3DR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


K


L


Primary referenceDNA damage detection in nucleosomes involves DNA register shifting., Matsumoto S, Cavadini S, Bunker RD, Grand RS, Potenza A, Rabl J, Yamamoto J, Schenk AD, Schubeler D, Iwai S, Sugasawa K, Kurumizaka H, Thoma NH, Nature. 2019 May 29. pii: 10.1038/s41586-019-1259-3. doi:, 10.1038/s41586-019-1259-3. PMID:31142837
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (708 Kb) [Save to disk]
  • Biological Unit Coordinates (6r90.pdb1.gz) 699 Kb
  • LPC: Ligand-Protein Contacts for 6R90
  • CSU: Contacts of Structural Units for 6R90
  • Retrieve 6R90 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6R90 from S2C, [Save to disk]
  • View 6R90 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6R90
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6r90 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6r90_H] [6r90_E] [6r90_D] [6r90_K] [6r90_J] [6r90_A] [6r90_G] [6r90_C] [6r90_F] [6r90_B] [6r90_I] [6r90_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6R90
  • Community annotation for 6R90 at PDBWiki (http://pdbwiki.org)

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